"enables Obsidian users to seamlessly add additional semantic structure to their notes, including specified page types and link types that model scientific discourse, to enable more complex and structured knowledge synthesis work, such as a complex interdisciplinary literature review, and enhanced collaboration with others on this work."

"an information model that enables everyone to map their ideas and arguments in a modular, composable graph format... allow researchers to break the scientific research process into its atomic elements in a way that can be shared, remixed, and updated... Like Lego™️bricks... a decentralized knowledge exchange protocol designed to be implemented…

How to study the ATmosphere, which "consists of multiple layers: Layer 4: Social phenomena (communities, discourse, norms) Layer 3: User behavior (posts, follows, moderation) Layer 2: Applications (Bluesky, various clients, Feeds) Layer 1: Protocol (AT Protocol, DID) Layer 0: Infrastructure (servers, networks) Each layer falls under different acad…

Good example of ATScience: "Paper Skygest is a personalized research feed that shows posts about papers from accounts in your following network."

Articulates what I was saying in Berlin, but makes a better case from the researchers' perspective:"Researchers' identities are fragmented. Grant IDs, ORCID, institutional email addresses, ResearchGate, Google Scholar, and various social media platforms... The core of "who I am" depends too heavily on institutions and platforms."Instead of thinkin…

A Guest Post from a couple of scientists from the Thomas Kuhn Foundation, created to "give science the means to see itself". They've created "a working system that can map how knowledge changes in real time... KGX3 detects and classifies the epistemic function of research papers... provide a complete understanding of what a paper does: confirm, st…

"Large organisations need dedicated tools and processes to manage their Bluesky presence and get the most out of ATproto".A repost onto Medium of version 4 of a wiki page I've been developing for most of the year.

Barry's call to "find collaborators to experiment with AT Protocol and explore new ways for researchers to publish, share, and collaborate". As he points out, there's real potential for AT4Science:"Open standards ensure transparency and long-term accessibility...Data interoperability makes it possible to connect tools, repositories, and datasets w…

"When infrastructure is too centralized, gatekeepers gain new powers to capture, enshittify, and censor."Short, link-rich piece on the many ways science is being undermined by gatekeeping scientific publishers and "Large intermediary platforms... inserting themselves between researchers and between the researchers and these published works—through…

Yet another longform ATproto writing app, "built for creators in STEM (science, technology, engineering, and mathematics), art, and business... designed to help you stay focused on the work itself... Our editor uses Markdown plus extensions designed for writers in specialized fields."Includes maths, code, visualisations (maths plots, mermaid), ar…

"We’ve built a network of scientists and researchers active on Bluesky. The goal is to better understand how this group of users interact on the platform... we arrived at a science-oriented network of 17,980", computed centrality measures to identify influential members, and created an interactive 3d visualisation.They also provide details of the …

"Bluesky posts about science garner more likes and reposts than similar ones on X... according to the first large-scale analysis of science content on Bluesky... suggest Bluesky users engage with posts more than do users of X... The results were posted as a preprint on arXiv last month and have not been peer reviewed.""Interactions on Bluesky wer…

X is still larger but very regularly Bluesky easily eclipses it in terms of research being shared.

This study examines:"the shift in the scientific community from X to Bluesky, its impact on scientific communication, and consequently on social metrics", following the Academic Twitter migration. Is there "evidence of a community shift", and if so "examine the differences in values and indicators..."? "provide valuable insights into whether Blue…

Altmetric's blog post announcing that they had "expanded its tracking capabilities by integrating Bluesky" when there were "over 20 million users".

This preprint "looks at the dynamics of this migration" from X to Mastodon of academics: using "publicly available user account data, we track the posting activity of academics on Mastodon over a one year period... gathered follower-followee relationships ... finding that the subset of academics ... were well-connected. However, this strong intern…

Some thoughts from a neuroscientist who's been kicking Bluesky's tyres: "The scientific community is once again shifting platforms... Between Mastodon’s ideals and Bluesky’s usability, we are faced with a complex landscape of compromises".Background: first he left X for Mastodon following Musk's purchase"over time, activity on Mastodon — at least …

"Incorporating science social media into the scientific process [as]... Sharing large scientific datasets is a pain in the ass, and finding them is even worse [so let's build] ... A true "scientific data commons".. it's called github."However Github's social dimension is totally centralised - "that people do still share (small) data this way regul…

Gary Marcus pouring cold water on Deep Research, "which... can write science-sounding articles on demand, on any topic of your choice".In many ways there's not much new here, except perhaps for how model collapse will affect science, not just LLMs.As known:LLMs flooding the zone with shit has been a concern since the beginning, and as they get bet…

More evidence that science is thriving on Bluesky: "Seventy per cent of [almost 6,000] Nature readers who responded to an online poll are using the social-media platform Bluesky...53% said they used to be on X but have now left...55% of respondents to the question ‘What do you use Bluesky for?’ said ...to connect with other scientists, keep up to …

According to Science, Bluesky "fosters collegial interactions among scientists, but potentially limits interactions beyond the academic community".It is becoming "the de facto meeting place for academics—many of whom seem to enjoy this “good boring.”". Why?default reverse chrono feed supports smaller accounts, and doesn't optimise for enragementcu…

“If you read 1,000 papers and build a powerful representation, humans can interrogate, mine, ask questions, and even get the system to generate new hypotheses...What you will learnAccelerating scientific discovery with generative knowledge extractionUnderstanding ontological knowledge graphs and their creationTransforming information into knowledg…

An interview with Demis Hassabis, head of Google DeepMind & architect behind AlphaFold.

A YANSS interview with Adam Grant, author of Think Again: The Power of Knowing What you Don’t Know. Generally an "extensive exploration of how to rethink your own thinking", including his WorkLife podcast interview of Margaret Atwood on procrastination.(When annotating a podcast I really like a transcript, but there was none for this episode so I …

“Words like ‘bone,’ ‘pubic,’ and ‘stream’ are frankly ridiculous to ban in a field where we regularly find pubic bones in streams,”.The text filter algorithm had some classic examples of embedded human biases - "Wang" was censored, "Johnson" was not.

counties that had voted for Donald Trump in 2016 exhibited 14% less physical distancing... higher Covid-19 infection and fatality growth rates ...the hormone oxytocin... promotes bonding... plays a role in trust... When participants trusted and felt trusted, oxytocin levels ... jumped... Trust just feels good... But risky if we give it to the w…

critical theory... reached a cultural tipping point in the middle of the 2010s... changing the very words we speak and write and the very rationale of the institutions integral to liberal democracy...Beginning as a critique of all grand theories of meaning... postmodernism is a project to subvert the intellectual foundations of western culture...…

unique, visual tool to help researchers and applied scientists find and explore papers relevant to their ... work... analyze ... ~50,000 papers and select the few dozen with the strongest connections to the origin paper.... arranged according to their similarity... papers that do not directly cite each other can be strongly connected and very clo…

each period,... had a distinct way of organizing basic human emotions into an overarching cultural system... of experiencing being alive... The virus is rewriting our imaginations. impossible has become thinkable... we’re entering a new world... learning ... a new structure of feeling... we’ve been overdue for such a shift... out of synch with …

geoengineering technologies are hypothetical... to be used ‘in case of emergency’ ... should radical emissions cuts fail... Running concurrently... ‘chemtrails’ ... interchangeably with the term geoengineering... belief that the persistent contrails left by aeroplanes provide evidence that a secret programme of large‐scale weather and climate modi…